Skip to main content
Home
: Biosphere Sciences & Engineering
Home

Go to full search
  • About Us
    • Our People
    • Our Path to Pasadena
    • Our Culture
  • Research Areas
    • Biodiversity & Adaptation to Climate Change
    • Atmospheric Science & Energy
    • Developmental Biology & Human Health
    • Genomics & Scientific Computing
    • Networks & Nested Ecosystems
    • Model System Development
    • Photosynthesis
    • Symbiosis
    • Water Quality
  • Latest News
  • Events
  • Resources
  • Donate
  • Contact Administration
  • Media Contacts
  • Financial Statements
  • Conflict of Interest Policy
  • Privacy Statement
  • Carnegie Science
  • Observatories
  • Earth & Planets Laboratory
  • Home
  • Our People
  • Postdoc

Min
Chen

Plant Science
My PhD research involved the use of genomics, proteomics, and metabolomics to study the changes that occur in the plant during microbial colonization.
Min Chen

Postdoctoral Fellow
Palo Alto, CA

email Email Me language Lab Members
Abstract
Nitrite, an intermediate product of the oxidation of ammonia to nitrate (nitrification), accumulates in upper oceans, forming the primary nitrite maximum (PNM). Nitrite concentrations in the PNM are relatively low in the western North Pacific subtropical gyre (wNPSG), where eddies are frequent and intense. To explain these low nitrite concentrations, we investigated nitrification in cyclonic eddies in the wNPSG. We detected relatively low half-saturation constants (i.e., high substrate affinities) for ammonia and nitrite oxidation at 150 to 200 meter water depth. Eddy-induced displacement of high-affinity nitrifiers and increased substrate supply enhanced ammonia and nitrite oxidation, depleting ambient substrate concentrations in the euphotic zone. Nitrite oxidation is more strongly enhanced by the cyclonic eddies than ammonia oxidation, reducing concentrations and accelerating the turnover of nitrite in the PNM. These findings demonstrate a spatial decoupling of the two steps of nitrification in response to mesoscale processes and provide insights into physical-ecological controls on the PNM.
View Publication open_in_new
Abstract
This paper presents a newly established sample of 19 unique galaxies and galaxy groups at redshift z = 0.8-1.21 in six QSO fields from the Cosmic Ultraviolet Baryon Survey (CUBS), designated as the CUBSz1 sample. In this sample, nine galaxies or galaxy groups show absorption features, while the other 10 systems exhibit 2 sigma upper limits of logN(HeI)/cm(-2) less than or similar to 13.5 and logN(OV)/cm(-2) less than or similar to 13.3. Environmental properties of the galaxies, including galaxy overdensities, the total stellar mass and gravitational potential summed over all neighbours, and the presence of local ionizing sources, are found to have a significant impact on the observed CGM absorption properties. Specifically, massive galaxies and galaxies in overdense regions exhibit a higher rate of incidence of absorption. The CGM absorption properties in galaxy groups appear to be driven by the galaxy closest to the QSO sightline, rather than by the most massive galaxy or by mass-weighted properties. We introduce a total projected gravitational potential psi, defined as -psi/G = Sigma(Mhalo)/d(proj) summed over all group members, to characterize the galaxy environment. This projected gravitational potential correlates linearly with the maximum density detected in each sightline (i.e. a power-law slope of 0.95(-0.14)(+0.15)), consistent with higher pressure gas being confined in deeper gravitational potential wells. In addition, we find that the radial profile of cool gas density exhibits a decline from the inner regions to the outskirts, and the amplitude is consistent with the cool gas being in pressure balance with the hot halo. Finally, we note that the ionizing flux from nearby galaxies can elevate the N(HI)/N(HeI) ratio, which provides a unique diagnostic of possible local sources contributing to the ionizing radiation field.
View Publication open_in_new
Abstract
This paper presents a newly established sample of galaxies and galaxy groups at redshift z ≈ 1 from the Cosmic Ultraviolet Baryon Survey (CUBS), for which sensitive constraints can be placed on the circumgalactic medium (CGM) using high-quality far-ultraviolet (FUV) and optical absorption spectra of background QSOs. The CUBS program has uncovered 19 unique galaxies or galaxy groups at z = 0.89 to 1.21 in six QSO fields, which is designated as the CUBSz1 sample. In this CUBSz1 sample, nine galaxies or galaxy groups show absorption features, while ten systems do not have detectable absorption with 2-σ upper limits of log N(He i) /cm−2 ≲ 13.5 and log N(O v)/cm−2 ≲ 13.3. Environmental properties of the galaxies, including galaxy overdensities, the total stellar mass and gravitational potential summed over all nearby neighbors, and the presence of local ionizing sources, are found to have a significant impact on the observed CGM absorption properties. Specifically, massive galaxies and galaxies in overdense regions exhibit a higher rate of incidence of absorption. At the same time, the observed CGM absorption properties in galaxy groups appear to be driven by the galaxy closest to the QSO sightline, rather than by the most massive galaxy or by mass-weighted properties. We introduce a total projected gravitational potential ψ, defined as −ψ/G = Σ Mhalo/dproj summed over all group members, to characterize the overall galaxy environment. This projected gravitational potential correlates linearly with the maximum density detected in each sightline (i.e., a power law slope of 0.95−0.14+0.15), consistent with higher-pressure gas being confined in deeper gravitational potential wells. In addition, we find that the radial profile of cool gas density exhibits a general decline from the inner regions to the outskirts, and the amplitude is consistent with the cool gas being in pressure balance with the hot halo. Finally, we note that the ionizing flux from nearby galaxies can generate an elevated N(H i)/N(He i) ratio, which in turn provides a unique diagnostic of possible local sources contributing to the ionizing radiation field.
View Publication open_in_new
Abstract
We present the first empirical constraints on the turbulent velocity field of the diffuse circumgalactic medium around four luminous quasi-stellar objects (QSOs) at z approximate to 0.5-1.1. Spatially extended nebulae of approximate to 50-100 physical kpc in diameter centred on the QSOs are revealed in [O II] lambda lambda 3727, 3729 and/or [O III] lambda 5008 emission lines in integral field spectroscopic observations obtained using Multi-Unit Spectroscopic Explorer on the Very Large Telescope. We measure the second- and third-order velocity structure functions (VSFs) over a range of scales, from less than or similar to 5 kpc to approximate to 20-50 kpc, to quantify the turbulent energy transfer between different scales in these nebulae. While no constraints on the energy injection and dissipation scales can be obtained from the current data, we show that robust constraints on the power-law slope of the VSFs can be determined after accounting for the effects of atmospheric seeing, spatial smoothing, and large-scale bulk flows. Out of the four QSO nebulae studied, one exhibits VSFs in spectacular agreement with the Kolmogorov law, expected for isotropic, homogeneous, and incompressible turbulent flows. The other three fields exhibit a shallower decline in the VSFs from large to small scales. However, with a limited dynamic range in the spatial scales in seeing-limited data, no constraints can be obtained for the VSF slopes of these three nebulae. For the QSO nebula consistent with the Kolmogorov law, we determine a turbulence energy cascade rate of approximate to 0.2 cm(2) s(-3). We discuss the implication of the observed VSFs in the context of QSO feeding and feedback in the circumgalactic medium.
View Publication open_in_new
Abstract
We report the discovery of giant (50-100 kpc) [O ii] emitting nebulae with MUSE in the field of TXS 0206-048, a luminous quasar at z = 1.13. "Down-the-barrel" UV spectra of the quasar show absorption at velocities coincident with those of the extended nebulae, enabling new insights into inflows and outflows around the quasar host. One nebula exhibits a filamentary morphology extending over 120 kpc from the halo toward the quasar and intersecting with another nebula surrounding the quasar host with a radius of 50 kpc. This is the longest cool filament observed to date and arises at higher redshift and in a less massive system than those in cool-core clusters. The filamentary nebula has line-of-sight velocities >300 km s(-1) from nearby galaxies but matches that of the nebula surrounding the quasar host where they intersect, consistent with accretion of cool intergalactic or circumgalactic medium or cooling hot halo gas. The kinematics of the nebulae surrounding the quasar host are unusual and complex, with redshifted and blueshifted spiral-like structures. The emission velocities at 5-10 kpc from the quasar match those of inflowing absorbing gas observed in UV spectra of the quasar. Together, the extended nebulae and associated redshifted absorption represent a compelling case of cool, filamentary gas accretion from halo scales into the extended interstellar medium and toward the nucleus of a massive quasar host. The inflow rate implied by the combined emission and absorption constraints is well below levels required to sustain the quasar's radiative luminosity, suggesting anisotropic or variable accretion.
View Publication open_in_new

Get the latest

Subscribe to our newsletters.

Sign up to select your areas of interest.

Privacy Policy